Publications

2024

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    Realistic Data Enrichment for Robust Image Segmentation in Histopathology
    5th MICCAI Workshop on Domain Adaptation and Representation Transfer, DART 2023 (Vancouver, BC, CAN, 12. October 2023 - 12. October 2023)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-031-45857-6_7
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    Metrics reloaded: recommendations for image analysis validation
    In: Nature Methods 21 (), p. 195-212
    ISSN: 1548-7091
    DOI: 10.1038/s41592-023-02151-z

2023

2022

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    nnOOD: A Framework for Benchmarking Self-supervised Anomaly Localisation Methods
    4th Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, SGP, 18. September 2022 - 18. September 2022)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-031-16749-2_10
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    PRETUS: A plug-in based platform for real-time ultrasound imaging research
    In: SoftwareX 17 (), Article No.: 100959
    ISSN: 2352-7110
    DOI: 10.1016/j.softx.2021.100959
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    A variational Bayesian method for similarity learning in non-rigid image registration
    2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2022 (New Orleans, LA, 19. June 2022 - 24. June 2022)
    In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition
    DOI: 10.1109/CVPR52688.2022.00022
  • Liu T., Meng Q., Huang J.J., Vlontzos A., Rueckert D., Kainz B.:
    Video Summarization Through Reinforcement Learning with a 3D Spatiooral U-Net
    In: IEEE Transactions on Image Processing 31 (), p. 1573-1586
    ISSN: 1057-7149
    DOI: 10.1109/TIP.2022.3143699
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    Adnexal Mass Segmentation with Ultrasound Data Synthesis
    3rd International Workshop of Advances in Simplifying Medical Ultrasound, ASMUS 2022, held in Conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, SGP, 18. September 2022 - 18. September 2022)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-031-16902-1_11
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    Fetal Cortex Segmentation with Topology and Thickness Loss Constraints
    1st Workshop on Ethical and Philosop Issues in Med Imaging (EPIMI) / 12th Int Workshop on Multimodal Learning and Fus Across Scales for Clin Decis Support (ML-CDS) / 2nd Int Workshop on Topol Data Anal for Biomed Imaging (TDA4BiomedicalImaging) (Singapore, SINGAPORE)
    In: ETHICAL AND PHILOSOPHICAL ISSUES IN MEDICAL IMAGING, MULTIMODAL LEARNING AND FUSION ACROSS SCALES FOR CLINICAL DECISION SUPPORT, AND TOPOLOGICAL DATA ANALYSIS FOR BIOMEDICAL IMAGING, EPIMI 2022, ML-CDS 2022, TDA4BIOMEDICALIMAGING, CHAM:
    DOI: 10.1007/978-3-031-23223-7_11
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    Video Summarization Through Reinforcement Learning with a 3D Spatiooral U-Net
    In: IEEE Transactions on Image Processing 31 (), p. 1573-1586
    ISSN: 1057-7149
    DOI: 10.1109/TIP.2022.3143699
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    Exploring a new paradigm for the fetal anomaly ultrasound scan: Artificial intelligence in real time
    In: Prenatal Diagnosis 42 (), p. 49-59
    ISSN: 0197-3851
    DOI: 10.1002/pd.6059
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    Improved Post-hoc Probability Calibration for Out-of-Domain MRI Segmentation
    4th Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, 18. September 2022 - 18. September 2022)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-031-16749-2_6
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    D’ARTAGNAN: Counterfactual Video Generation
    25th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2022 (Singapore, 18. September 2022 - 22. September 2022)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-031-16452-1_57
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    Natural Synthetic Anomalies for Self-supervised Anomaly Detection and Localization
    17th European Conference on Computer Vision, ECCV 2022 (Tel Aviv, 23. October 2022 - 27. October 2022)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-031-19821-2_27
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    MetaDetector: Detecting Outliers by Learning to Learn from Self-supervision
    24th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2021 (Strasbourg, FRA, 27. September 2021 - 1. October 2021)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-97281-3_18
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    MOOD 2020: A Public Benchmark for Out-of-Distribution Detection and Localization on Medical Images
    In: IEEE Transactions on Medical Imaging 41 (), p. 2728-2738
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2022.3170077

2021

2020

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    Surface Agnostic Metrics for Cortical Volume Segmentation and Regression
    3rd International Workshop on Machine Learning in Clinical Neuroimaging, MLCN 2020, and 2nd International Workshop on Radiogenomics in Neuro-oncology, RNO-AI 2020, held in conjunction with MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-66843-3_1
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    Image Registration via Stochastic Gradient Markov Chain Monte Carlo
    2nd International Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2020, and the 3rd International Workshop on Graphs in Biomedical Image Analysis, GRAIL 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 8. October 2020 - 8. October 2020)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-60365-6_1
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    Projective Latent Interventions for Understanding and Fine-Tuning Classifiers
    3rd International Workshop on Interpretability of Machine Intelligence in Medical Image Computing, iMIMIC 2020, the 2nd International Workshop on Medical Image Learning with Less Labels and Imperfect Data, MIL3ID 2020, and the 5th International Workshop on Large-scale Annotation of Biomedical data and Expert Label Synthesis, LABELS 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-61166-8_2
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    Ultrasound Video Summarization Using Deep Reinforcement Learning
    23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-59716-0_46
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    Unsupervised Cross-domain Image Classification by Distance Metric Guided Feature Alignment
    1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-60334-2_15
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    Geomstats: A python package for riemannian geometry in machine learning
    In: Journal of Machine Learning Research 21 ()
    ISSN: 1532-4435
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    Automated Detection of Congenital Heart Disease in Fetal Ultrasound Screening
    1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-60334-2_24
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    Divergent search for image classification behaviors
    2020 Genetic and Evolutionary Computation Conference, GECCO 2020 (Cancun, MEX, 8. July 2020 - 12. July 2020)
    In: GECCO 2020 Companion - Proceedings of the 2020 Genetic and Evolutionary Computation Conference Companion
    DOI: 10.1145/3377929.3389973
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    3D Probabilistic Segmentation and Volumetry from 2D Projection Images
    2nd International Workshop on Thoracic Image Analysis, TIA 2020 Held in Conjunction with Medical Image Computing and Computer-Assisted Intervention Conference, MICCAI 2020 (Lima, PER, 8. October 2020 - 8. October 2020)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-62469-9_5

2019

2018

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    Automatic view planning with multi-scale deep reinforcement learning agents
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00928-1_32
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    Automated cardiovascular magnetic resonance image analysis with fully convolutional networks 08 Information and Computing Sciences 0801 Artificial Intelligence and Image Processing
    In: Journal of Cardiovascular Magnetic Resonance 20 (), Article No.: 65
    ISSN: 1097-6647
    DOI: 10.1186/s12968-018-0471-x
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    3D fetal skull reconstruction from 2DUS via deep conditional generative networks
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00928-1_44
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    3-D Reconstruction in Canonical Co-Ordinate Space from Arbitrarily Oriented 2-D Images
    In: IEEE Transactions on Medical Imaging 37 (), p. 1737-1750
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2018.2798801
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    Computing CNN loss and gradients for pose estimation with Riemannian geometry
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00928-1_85
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    RAMBO 2018 Preface
    In: Image Analysis for Moving Organ, Breast, and Thoracic Images - Third International Workshop, RAMBO 2018, Fourth International Workshop, BIA 2018, and First International Workshop, TIA 2018, Held in Conjunction with MICCAI 2018, Proceedings, Springer Verlag, , p. VII- (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol.11040 LNCS)
  • Lloyd DFA, van Poppel M, Schultz A, Pushparajah K, Simpson J, van Amerom JFP, Kainz B, Kuklisova-Murgasova M, Vigneswaran T, Charakida M, Miller O, Zidere V, Sharland G, Rutherford M, Hajnal J, Razavi R:
    MOTION CORRECTED FETAL CARDIAC MRI INCREASES DIAGNOSTIC CONFIDENCE IN CLINICALLY CHALLENGING CASES
    In: Heart 104 (), p. A11-A11
    ISSN: 1355-6037
    DOI: 10.1136/heartjnl-2017-BCCA.31
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    Ensembles of multiple models and architectures for robust brain tumour segmentation
    3rd International Workshop on Brainlesion, BrainLes 2017 Held in Conjunction with Medical Image Computing for Computer Assisted Intervention , MICCAI 2017 (Quebec City, QC, CAN, 14. September 2017 - 14. September 2017)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-319-75238-9_38
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    EchoFusion: Tracking and reconstruction of objects in 4D freehand ultrasound imaging without external trackers
    1st International Workshop on Data Driven Treatment Response Assessment, DATRA 2018 and 3rd International Workshop on Preterm, Perinatal, and Paediatric Image Analysis, PIPPI 2018 Held in Conjunction with 21st International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 16. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00807-9_12
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    Fast multiple landmark localisation using a patch-based iterative network
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00928-1_64
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    Standard plane detection in 3D fetal ultrasound using an iterative transformation network
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00928-1_45
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    Automatic shadow detection in 2D ultrasound images
    1st International Workshop on Data Driven Treatment Response Assessment, DATRA 2018 and 3rd International Workshop on Preterm, Perinatal, and Paediatric Image Analysis, PIPPI 2018 Held in Conjunction with 21st International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 16. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00807-9_7
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    Anatomically Constrained Neural Networks (ACNNs): Application to Cardiac Image Enhancement and Segmentation
    In: IEEE Transactions on Medical Imaging 37 (), p. 384-395
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2017.2743464
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    Real-Time Prediction of Segmentation Quality
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00937-3_66
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    Human-level Performance on Automatic Head Biometrics in Fetal Ultrasound Using Fully Convolutional Neural Networks
    40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018 (Honolulu, HI, USA, 18. July 2018 - 21. July 2018)
    In: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS
    DOI: 10.1109/EMBC.2018.8512278
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    AutoDVT: Joint real-time classification for vein compressibility analysis in deep vein thrombosis ultrasound diagnostics
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-030-00934-2_100
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    Altered biomechanical stimulation of the developing hip joint in presence of hip dysplasia risk factors
    In: Journal of Biomechanics 78 (), p. 1-9
    ISSN: 0021-9290
    DOI: 10.1016/j.jbiomech.2018.07.016
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    Stresses and strains on the human fetal skeleton during development
    In: Journal of the Royal Society Interface 15 (), Article No.: 20170593
    ISSN: 1742-5689
    DOI: 10.1098/rsif.2017.0593

2017

2016

2015

2014

2013

2012

2011

2010

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    Vessel segmentation for ablation treatment planning and simulation
    13th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2010 (CHN, 20. September 2010 - 24. September 2010)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
    DOI: 10.1007/978-3-642-15705-9_6

2009

2008