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Publications

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  • Publications

Publications

2025

  • Erick F., Mina R., Müller J., Kainz B.:
    Uncertainty-Aware Vision Transformers for Medical Image Analysis
    In: Uncertainty for Safe Utilization of Machine Learning in Medical Imaging: 6th International Workshop, UNSURE 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 10, 2024, Proceedings 2025
    DOI: 10.1007/978-3-031-73158-7_16
  • Müller J., Kainz B.:
    Resource-Efficient Medical Image Analysis with Self-adapting Forward-Forward Networks
    15th International Workshop on Machine Learning in Medical Imaging, MLMI 2024 was held in conjunction with the 27th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2024 (Marrakesh, 6. October 2024 - 6. October 2024)
    In: Xuanang Xu, Zhiming Cui, Kaicong Sun, Islem Rekik, Xi Ouyang (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2025
    DOI: 10.1007/978-3-031-73290-4_18
  • Venturini L., Budd S., Farruggia A., Wright R., Matthew J., Day TG., Kainz B., Razavi R., Hajnal JV.:
    Whole examination AI estimation of fetal biometrics from 20-week ultrasound scans
    In: npj Digital Medicine 8 (2025), p. 1--12
    ISSN: 2398-6352
    DOI: 10.1038/s41746-024-01406-z
  • Vlontzos A., Müller C., Kainz B.:
    Causal reasoning in medical imaging
    In: Trustworthy AI in Medical Imaging, Academic Press, 2025, p. 367-381 (The MICCAI Society)
    ISBN: 9780443237614

    DOI: 10.1016/B978-0-44-323761-4.00029-8
  • Öttl M., Wilm F., Steenpaß J., Qiu J., Rübner M., Hartmann A., Beckmann M., Fasching P., Maier A., Erber R., Kainz B., Breininger K.:
    Style-Extracting Diffusion Models for Semi-supervised Histopathology Segmentation
    18th European Conference on Computer Vision, ECCV 2024 (Milan, 29. September 2024 - 4. October 2024)
    In: Aleš Leonardis, Elisa Ricci, Stefan Roth, Olga Russakovsky, Torsten Sattler, Gül Varol (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2025
    DOI: 10.1007/978-3-031-73226-3_14

2024

  • Azampour MF., Mach K., Fatemizadeh E., Demiray B., Westenfelder K., Steiger K., Eiber M., Wendler T., Kainz B., Navab N.:
    Multitask Weakly Supervised Generative Network for MR-US Registration
    In: IEEE Transactions on Medical Imaging (2024), p. 1-1
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2024.3400899
  • Basaran BD., Zhang W., Qiao M., Kainz B., Matthews PM., Bai W.:
    LesionMix: A Lesion-Level Data Augmentation Method for Medical Image Segmentation
    3rd International Workshop on Data Augmentation, Labeling, and Imperfections, DALI 2023 in conjunction with the 26th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2023 (Vancouver, BC, CAN, 12. October 2023 - 12. October 2023)
    In: Yuan Xue, Chen Chen, Chao Chen, Lianrui Zuo, Yihao Liu (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2024
    DOI: 10.1007/978-3-031-58171-7_8
  • Cechnicka S., Ball J., Baugh M., Reynaud H., Simmonds N., Smith AP., Horsfield C., Roufosse C., Kainz B.:
    URCDM: Ultra-Resolution Image Synthesis in Histopathology
    27th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2024 (Marrakesh, MAR, 6. October 2024 - 10. October 2024)
    In: Marius George Linguraru, Qi Dou, Aasa Feragen, Stamatia Giannarou, Ben Glocker, Karim Lekadir, Julia A. Schnabel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2024
    DOI: 10.1007/978-3-031-72083-3_50
    URL: https://link.springer.com/chapter/10.1007/978-3-031-72083-3_50
  • Cechnicka S., Ball J., Reynaud H., Arthurs C., Roufosse C., Kainz B.:
    Realistic Data Enrichment for Robust Image Segmentation in Histopathology
    5th MICCAI Workshop on Domain Adaptation and Representation Transfer, DART 2023 (Vancouver, BC, CAN, 12. October 2023 - 12. October 2023)
    In: Lisa Koch, M. Jorge Cardoso, Enzo Ferrante, Konstantinos Kamnitsas, Mobarakol Islam, Meirui Jiang, Nicola Rieke, Sotirios A. Tsaftaris, Dong Yang (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2024
    DOI: 10.1007/978-3-031-45857-6_7
  • Day TG., Matthew J., Budd S., Venturini L., Wright R., Farruggia A., Jamshidi B., Syngelaki A., Ling H., Tan M., Lai J., Brown M., To M., Guy GP., Arechvo A., Casagrandi D., Akolekar R., Nanda S., Nicolaides K., Kainz B., Simpson J., Hajnal J., Razavi R.:
    Artificial intelligence to assist in the screening fetal anomaly ultrasound scan (PROMETHEUS): a randomised controlled trial
    34th World Congress on Ultrasound in Obstetrics and Gynecology (Budapest, 15. September 2024 - 18. September 2024)
    In: Abstracts of the 34th World Congress on Ultrasound in Obstetrics and Gynecology, 15–18 September 2024, Budapest, Hungary 2024
    DOI: 10.1002/uog.28023
  • Dombrowski M., Reynaud H., Müller J., Baugh M., Kainz B.:
    Trade-Offs in Fine-Tuned Diffusion Models between Accuracy and Interpretability
    38th AAAI Conference on Artificial Intelligence, AAAI 2024 (Vancouver, 20. February 2024 - 27. February 2024)
    In: Association for the Advancement of Artificial Intelligence (ed.): AAAI-24 Special Track Safe, Robust and Responsible AI Track, Washington, DC: 2024
    DOI: 10.1609/aaai.v38i19.30095
  • Grzech D., Folgoc LL., Azampour MF., Vlontzos A., Glocker B., Navab N., Schnabel J., Kainz B.:
    Unsupervised Similarity Learning for Image Registration with Energy-Based Models
    11th International Workshop on Biomedical Image Registration, WBIR 2024, held in conjunction with the 27th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2024 (Marrakesh, MAR, 6. October 2024 - 6. October 2024)
    In: Marc Modat, Žiga Špiclin, Alessa Hering, Ivor Simpson, Wietske Bastiaansen, Tony C. W. Mok (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2024
    DOI: 10.1007/978-3-031-73480-9_18
  • Li L., Wang H., Baugh M., Ma Q., Zhang W., Ouyang C., Rueckert D., Kainz B.:
    Universal Topology Refinement for Medical Image Segmentation with Polynomial Feature Synthesis
    27th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2024 (Marrakesh, MAR, 6. October 2024 - 10. October 2024)
    In: Marius George Linguraru, Qi Dou, Aasa Feragen, Stamatia Giannarou, Ben Glocker, Karim Lekadir, Julia A. Schnabel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2024
    DOI: 10.1007/978-3-031-72114-4_64
  • Li Z., Kainz B.:
    Image distillation for safe data sharing in histopathology
    In: International Conference on Medical Image Computing and Computer-Assisted Intervention 2024
    DOI: 10.1007/978-3-031-72117-5_43
  • Maier-Hein L., Reinke A., Godau P., Tizabi MD., Buettner F., Christodoulou E., Glocker B., Isensee F., Kleesiek J., Kozubek M., Reyes M., Riegler MA., Wiesenfarth M., Kavur AE., Sudre CH., Baumgartner M., Eisenmann M., Heckmann-Nötzel D., Rädsch T., Acion L., Antonelli M., Arbel T., Bakas S., Benis A., Blaschko MB., Cardoso MJ., Cheplygina V., Cimini BA., Collins GS., Farahani K., Ferrer L., Galdran A., van Ginneken B., Haase R., Hashimoto DA., Hoffman MM., Huisman M., Jannin P., Kahn CE., Kainmueller D., Kainz B., Karargyris A., Karthikesalingam A., Kofler F., Kopp-Schneider A., Kreshuk A., Kurc T., Landman BA., Litjens G., Madani A., Maier-Hein K., Martel AL., Mattson P., Meijering E., Menze B., Moons KG., Müller H., Nichyporuk B., Nickel F., Petersen J., Rajpoot N., Rieke N., Saez-Rodriguez J., Sánchez CI., Shetty S., van Smeden M., Summers RM., Taha AA., Tiulpin A., Tsaftaris SA., Van Calster B., Varoquaux G., Jäger PF.:
    Metrics reloaded: recommendations for image analysis validation
    In: Nature Methods 21 (2024), p. 195-212
    ISSN: 1548-7091
    DOI: 10.1038/s41592-023-02151-z
  • Marimont SN., Baugh M., Siomos V., Tzelepis C., Kainz B., Tarroni G.:
    DISYRE: Diffusion-Inspired Synthetic Restoration for Unsupervised Anomaly Detection
    21st IEEE International Symposium on Biomedical Imaging, ISBI 2024 (Athens, GRC, 27. May 2024 - 30. May 2024)
    In: Proceedings - International Symposium on Biomedical Imaging 2024
    DOI: 10.1109/ISBI56570.2024.10635161
  • Reinke A., Tizabi MD., Baumgartner M., Eisenmann M., Heckmann-Nötzel D., Kavur AE., Rädsch T., Sudre CH., Acion L., Antonelli M., Arbel T., Bakas S., Benis A., Buettner F., Cardoso MJ., Cheplygina V., Chen J., Christodoulou E., Cimini BA., Farahani K., Ferrer L., Galdran A., van Ginneken B., Glocker B., Godau P., Hashimoto DA., Hoffman MM., Huisman M., Isensee F., Jannin P., Kahn CE., Kainmueller D., Kainz B., Karargyris A., Kleesiek J., Kofler F., Kooi T., Kopp-Schneider A., Kozubek M., Kreshuk A., Kurc T., Landman BA., Litjens G., Madani A., Maier-Hein K., Martel AL., Meijering E., Menze B., Moons KG., Müller H., Nichyporuk B., Nickel F., Petersen J., Rafelski SM., Rajpoot N., Reyes M., Riegler MA., Rieke N., Saez-Rodriguez J., Sánchez CI., Shetty S., Summers RM., Taha AA., Tiulpin A., Tsaftaris SA., Van Calster B., Varoquaux G., Yaniv ZR., Jäger PF., Maier-Hein L.:
    Understanding metric-related pitfalls in image analysis validation
    In: Nature Methods 21 (2024), p. 182-194
    ISSN: 1548-7091
    DOI: 10.1038/s41592-023-02150-0
  • Reynaud H., Meng Q., Dombrowski M., Ghosh A., Day T., Gomez A., Leeson P., Kainz B.:
    Echonet-synthetic: Privacy-preserving video generation for safe medical data sharing
    In: International Conference on Medical Image Computing and Computer-Assisted Intervention 2024
    DOI: 10.1007/978-3-031-72104-5_28
  • Stegmaier M., Schröder C., Müller J., Day T., Cuomo M., Dewald O., Dittrich S., Kainz B.:
    Automatic Segmentation of Lymphatic Perfusion in Patients with Congenital Single Ventricle Defects
    German Conference on Medical Image Computing, BVM 2024 (Erlangen, 10. March 2024 - 12. March 2024)
    In: Andreas Maier, Thomas M. Deserno, Heinz Handels, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2024. BVM 2024, Wiesbaden: 2024
    DOI: 10.1007/978-3-658-44037-4_70
  • Stelter J., Weiss K., Steinhelfer L., Spieker V., Huaroc Moquillaza E., Zhang W., Makowski MR., Schnabel JA., Kainz B., Braren RF., Karampinos DC.:
    Simultaneous whole-liver water T1 and T2 mapping with isotropic resolution during free-breathing
    In: NMR in Biomedicine (2024)
    ISSN: 0952-3480
    DOI: 10.1002/nbm.5216
  • Zarzor MS., Ma Q., Almurey M., Kainz B., Budday S.:
    Exploring the role of different cell types on cortical folding in the developing human brain through computational modeling
    In: Scientific Reports 14 (2024), Article No.: 26103
    ISSN: 2045-2322
    DOI: 10.1038/s41598-024-75952-7

2023

  • Avgerinos E., Oppenheimer J., Al-Noor F., Karimaghaei R., Adler A., Singöhl S., Kainz B., Mandegaran R., Heinrich MP., Spiliopoulos S., Geroulakos G., Mischkewitz S.:
    Remote Expert Deep Venous Thrombosis Triaging of Novice-User Compression Sonography with Artificial Intelligence Guidance
    In: Journal of Vascular Surgery: Venous and Lymphatic Disorders 11 (2023), p. 449
    DOI: 10.1016/j.jvsv.2022.12.025
  • Baugh M., Tan J., Müller JP., Dombrowski M., Batten J., Kainz B.:
    Many Tasks Make Light Work: Learning to Localise Medical Anomalies from Multiple Synthetic Tasks
    26th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2023 (Vancouver, BC, CAN, 8. October 2023 - 12. October 2023)
    In: Hayit Greenspan, Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu Salcudean, James Duncan, Tanveer Syeda-Mahmood, Russell Taylor (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2023
    DOI: 10.1007/978-3-031-43907-0_16
  • Day TG., Budd S., Tan J., Matthew J., Skelton E., Jowett V., Lloyd D., Gomez A., Hajnal JV., Razavi R., Kainz B., Simpson JM.:
    Prenatal diagnosis of hypoplastic left heart syndrome on ultrasound using artificial intelligence: How does performance compare to a current screening programme?
    In: Prenatal Diagnosis (2023)
    ISSN: 0197-3851
    DOI: 10.1002/pd.6445
  • Day TG., Kainz B., Razavi R., Simpson J.:
    RE: Wang et al. Diagnosis of fetal total anomalous pulmonary venous connection based on the post-left atrium space ratio using artificial intelligence
    In: Prenatal Diagnosis (2023)
    ISSN: 0197-3851
    DOI: 10.1002/pd.6287
  • Day TG., Simpson JM., Razavi R., Kainz B.:
    Improving image labelling quality
    In: Nature Machine Intelligence 5 (2023), p. 335-336
    ISSN: 2522-5839
    DOI: 10.1038/s42256-023-00645-1
  • Dombrowski M., Reynaud H., Baugh M., Kainz B.:
    Foreground-Background Separation through Concept Distillation from Generative Image Foundation Models
    2023 IEEE/CVF International Conference on Computer Vision, ICCV 2023 (Paris, 2. October 2023 - 6. October 2023)
    In: 2023 IEEE/CVF International Conference on Computer Vision (ICCV) 2023
    DOI: 10.1109/ICCV51070.2023.00097
  • Hinterreiter A., Humer C., Kainz B., Streit M.:
    ParaDime: A Framework for Parametric Dimensionality Reduction
    In: Computer Graphics Forum 42 (2023), p. 337-348
    ISSN: 0167-7055
    DOI: 10.1111/cgf.14834
  • Jehn C., Müller J., Kainz B.:
    Learnable Slice-to-volume Reconstruction for Motion Compensation in Fetal Magnetic Resonance Imaging
    Bildverarbeitung für die Medizin Workshop, BVM 2023 (Braunschweig, 2. July 2023 - 4. July 2023)
    In: Thomas M. Deserno, Heinz Handels, Andreas Maier, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Informatik aktuell 2023
    DOI: 10.1007/978-3-658-41657-7_10
  • Kainz B.:
    Keynote: Beyond Supervised Learning Exploring Novel Machine Learning Approaches for Robust Medical Image Analysis
    Bildverarbeitung für die Medizin Workshop, BVM 2023 (Braunschweig, 2. July 2023 - 4. July 2023)
    In: Thomas M. Deserno, Heinz Handels, Andreas Maier, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Informatik aktuell 2023
    DOI: 10.1007/978-3-658-41657-7_1
  • Kainz B., Noble JA., Schnabel J., Khanal B., Müller J., Day T. (ed.):
    Simplifying Medical Ultrasound
    Cham: 2023
    (Lecture Notes in Computer Science, Vol. 14337)
    ISBN: 9783031445200
    DOI: 10.1007/978-3-031-44521-7
  • Li L., Ma Q., Ouyang C., Li Z., Meng Q., Zhang W., Qiao M., Kyriakopoulou V., Hajnal JV., Rueckert D., Kainz B.:
    Robust Segmentation via Topology Violation Detection and Feature Synthesis
    26th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2023 (Vancouver, BC, 8. October 2023 - 12. October 2023)
    In: Hayit Greenspan, Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu Salcudean, James Duncan, Tanveer Syeda-Mahmood, Russell Taylor (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2023
    DOI: 10.1007/978-3-031-43901-8_7
  • Ma Q., Li L., Kyriakopoulou V., Hajnal JV., Robinson EC., Kainz B., Rueckert D.:
    Conditional Temporal Attention Networks for Neonatal Cortical Surface Reconstruction
    26th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2023 (Vancouver, BC, 8. October 2023 - 12. October 2023)
    In: Hayit Greenspan, Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu Salcudean, James Duncan, Tanveer Syeda-Mahmood, Russell Taylor (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2023
    DOI: 10.1007/978-3-031-43901-8_30
  • Müller J., Baugh M., Tan J., Dombrowski M., Kainz B.:
    Confidence-Aware and Self-supervised Image Anomaly Localisation
    Uncertainty for Safe Utilization of Machine Learning in Medical Imaging (Vancouver, 12. October 2023 - 12. October 2023)
    In: Carole H. Sudre, Christian F. Baumgartner, Adrian Dalca, Raghav Mehta, Chen Qin, William M. Wells (ed.): Uncertainty for Safe Utilization of Machine Learning in Medical Imaging 2023
    DOI: 10.1007/978-3-031-44336-7_18
  • Oppenheimer J., Mandegaran R., Staabs F., Adler A., Singöhl S., Kainz B., Heinrich M., Geroulakos G., Spiliopoulos S., Avgerinos E.:
    Remote Expert DVT Triaging of Novice-User Compression Sonography with AI-Guidance
    In: Annals of Vascular Surgery (2023)
    ISSN: 0890-5096
    DOI: 10.1016/j.avsg.2023.08.022
  • Reynaud H., Qiao M., Dombrowski M., Day T., Razavi R., Gomez A., Leeson P., Kainz B.:
    Feature-Conditioned Cascaded Video Diffusion Models for Precise Echocardiogram Synthesis
    26th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2023 (Vancouver, BC, 8. October 2023 - 12. October 2023)
    In: Hayit Greenspan, Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu Salcudean, James Duncan, Tanveer Syeda-Mahmood, Russell Taylor (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2023
    DOI: 10.1007/978-3-031-43999-5_14
  • Sarapata G., Dushin Y., Morinan G., Ong J., Budhdeo S., Kainz B., O'Keeffe J.:
    Video-Based Activity Recognition for Automated Motor Assessment of Parkinson's Disease
    In: IEEE Journal of Biomedical and Health Informatics 27 (2023), p. 5032-5041
    ISSN: 2168-2194
    DOI: 10.1109/JBHI.2023.3298530
  • Schmidtke L., Hou B., Vlontzos A., Kainz B.:
    Self-supervised 3D Human Pose Estimation in Static Video via Neural Rendering
    17th European Conference on Computer Vision, ECCV 2022 (Tel Aviv, ISR, 23. October 2022 - 27. October 2022)
    In: Leonid Karlinsky, Tomer Michaeli, Ko Nishino (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2023
    DOI: 10.1007/978-3-031-25066-8_42
  • Shkëmbi G., Müller J., Li Z., Breininger K., Schüffler P., Kainz B.:
    Whole Slide Multiple Instance Learning for Predicting Axillary Lymph Node Metastasis
    1st MICCAI Workshop on Data Engineering in Medical Imaging, DEMI 2023 (Vancouver, BC, 8. October 2023 - 8. October 2023)
    In: Binod Bhattarai, Sharib Ali, Anita Rau, Anh Nguyen, Ana Namburete, Razvan Caramalau, Danail Stoyanov (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2023
    DOI: 10.1007/978-3-031-44992-5_2
  • Vlontzos A., Kainz B., Gilligan-Lee CM.:
    Estimating categorical counterfactuals via deep twin networks
    In: Nature Machine Intelligence 5 (2023), p. 159-168
    ISSN: 2522-5839
    DOI: 10.1038/s42256-023-00611-x
  • Zhang W., Basaran B., Meng Q., Baugh M., Stelter J., Lung P., Patel U., Bai W., Karampinos D., Kainz B.:
    MoCoSR: Respiratory Motion Correction and Super-Resolution for 3D Abdominal MRI
    26th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2023 (Vancouver, BC, 8. October 2023 - 12. October 2023)
    In: Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu Salcudean, James Duncan, Tanveer Syeda-Mahmood, Russell Taylor (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2023
    DOI: 10.1007/978-3-031-43999-5_12
  • Zimmer VA., Gomez A., Skelton E., Wright R., Wheeler G., Deng S., Ghavami N., Lloyd K., Matthew J., Kainz B., Rueckert D., Hajnal JV., Schnabel JA.:
    Placenta segmentation in ultrasound imaging: Addressing sources of uncertainty and limited field-of-view
    In: Medical Image Analysis 83 (2023), Article No.: 102639
    ISSN: 1361-8415
    DOI: 10.1016/j.media.2022.102639

2022

  • Baugh M., Tan J., Vlontzos A., Müller J., Kainz B.:
    nnOOD: A Framework for Benchmarking Self-supervised Anomaly Localisation Methods
    4th Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, SGP, 18. September 2022 - 18. September 2022)
    In: Carole H. Sudre, Carole H. Sudre, Christian F. Baumgartner, Adrian Dalca, Adrian Dalca, William M. Wells III, Chen Qin, Ryutaro Tanno, Koen Van Leemput, Koen Van Leemput, William M. Wells III (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
    DOI: 10.1007/978-3-031-16749-2_10
  • Gomez A., Zimmer VA., Wheeler G., Toussaint N., Deng S., Wright R., Skelton E., Matthew J., Kainz B., Hajnal J., Schnabel J.:
    PRETUS: A plug-in based platform for real-time ultrasound imaging research
    In: SoftwareX 17 (2022), Article No.: 100959
    ISSN: 2352-7110
    DOI: 10.1016/j.softx.2021.100959
  • Grzech D., Azampour MF., Glocker B., Schnabel J., Navab N., Kainz B., Folgoc LL.:
    A variational Bayesian method for similarity learning in non-rigid image registration
    2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2022 (New Orleans, LA, 19. June 2022 - 24. June 2022)
    In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition 2022
    DOI: 10.1109/CVPR52688.2022.00022
  • Liu T., Meng Q., Huang J.J., Vlontzos A., Rueckert D., Kainz B.:
    Video Summarization Through Reinforcement Learning with a 3D Spatiooral U-Net
    In: IEEE Transactions on Image Processing 31 (2022), p. 1573-1586
    ISSN: 1057-7149
    DOI: 10.1109/TIP.2022.3143699
  • Lebbos C., Barcroft J., Tan J., Müller J., Baugh M., Vlontzos A., Saso S., Kainz B.:
    Adnexal Mass Segmentation with Ultrasound Data Synthesis
    3rd International Workshop of Advances in Simplifying Medical Ultrasound, ASMUS 2022, held in Conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, SGP, 18. September 2022 - 18. September 2022)
    In: Stephen Aylward, J. Alison Noble, Yipeng Hu, Su-Lin Lee, Zachary Baum, Zhe Min (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
    DOI: 10.1007/978-3-031-16902-1_11
  • Li L., Ma Q., Li Z., Ouyang C., Zhang W., Price A., Kyriakopoulou V., Grande LC., Makropoulos A., Hajnal J., Rueckert D., Kainz B., Alansary A.:
    Fetal Cortex Segmentation with Topology and Thickness Loss Constraints
    1st Workshop on Ethical and Philosop Issues in Med Imaging (EPIMI) / 12th Int Workshop on Multimodal Learning and Fus Across Scales for Clin Decis Support (ML-CDS) / 2nd Int Workshop on Topol Data Anal for Biomed Imaging (TDA4BiomedicalImaging) (Singapore, SINGAPORE)
    In: ETHICAL AND PHILOSOPHICAL ISSUES IN MEDICAL IMAGING, MULTIMODAL LEARNING AND FUSION ACROSS SCALES FOR CLINICAL DECISION SUPPORT, AND TOPOLOGICAL DATA ANALYSIS FOR BIOMEDICAL IMAGING, EPIMI 2022, ML-CDS 2022, TDA4BIOMEDICALIMAGING, CHAM: 2022
    DOI: 10.1007/978-3-031-23223-7_11
  • Liu T., Meng Q., Huang JJ., Vlontzos A., Rueckert D., Kainz B.:
    Video Summarization Through Reinforcement Learning with a 3D Spatiooral U-Net
    In: IEEE Transactions on Image Processing 31 (2022), p. 1573-1586
    ISSN: 1057-7149
    DOI: 10.1109/TIP.2022.3143699
  • Matthew J., Skelton E., Day TG., Zimmer VA., Gomez A., Wheeler G., Toussaint N., Liu T., Budd S., Lloyd K., Wright R., Deng S., Ghavami N., Sinclair M., Meng Q., Kainz B., Schnabel JA., Rueckert D., Razavi R., Simpson J., Hajnal J.:
    Exploring a new paradigm for the fetal anomaly ultrasound scan: Artificial intelligence in real time
    In: Prenatal Diagnosis 42 (2022), p. 49-59
    ISSN: 0197-3851
    DOI: 10.1002/pd.6059
  • Ouyang C., Wang S., Chen C., Li Z., Bai W., Kainz B., Rueckert D.:
    Improved Post-hoc Probability Calibration for Out-of-Domain MRI Segmentation
    4th Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, 18. September 2022 - 18. September 2022)
    In: Carole H. Sudre, Carole H. Sudre, Christian F. Baumgartner, Adrian Dalca, Adrian Dalca, William M. Wells III, Chen Qin, Ryutaro Tanno, Koen Van Leemput, Koen Van Leemput, William M. Wells III (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
    DOI: 10.1007/978-3-031-16749-2_6
  • Reynaud H., Vlontzos A., Dombrowski M., Gilligan Lee C., Beqiri A., Leeson P., Kainz B.:
    D’ARTAGNAN: Counterfactual Video Generation
    25th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2022 (Singapore, 18. September 2022 - 22. September 2022)
    In: Linwei Wang, Qi Dou, P. Thomas Fletcher, Stefanie Speidel, Shuo Li (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
    DOI: 10.1007/978-3-031-16452-1_57
  • Schlüter HM., Tan J., Hou B., Kainz B.:
    Natural Synthetic Anomalies for Self-supervised Anomaly Detection and Localization
    17th European Conference on Computer Vision, ECCV 2022 (Tel Aviv, 23. October 2022 - 27. October 2022)
    In: Shai Avidan, Gabriel Brostow, Moustapha Cissé, Giovanni Maria Farinella, Tal Hassner (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
    DOI: 10.1007/978-3-031-19821-2_27
  • Tan J., Kart T., Hou B., Batten J., Kainz B.:
    MetaDetector: Detecting Outliers by Learning to Learn from Self-supervision
    24th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2021 (Strasbourg, FRA, 27. September 2021 - 1. October 2021)
    In: Marc Aubreville, David Zimmerer, Mattias Heinrich (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
    DOI: 10.1007/978-3-030-97281-3_18
  • Zimmerer D., Full PM., Isensee F., Jaeger P., Adler T., Petersen J., Koehler G., Ross T., Reinke A., Kascenas A., Jensen BS., O'Neil AQ., Tan J., Hou B., Batten J., Qiu H., Kainz B., Shvetsova N., Fedulova I., Dylov D., Yu B., Zhai J., Hu J., Si R., Zhou S., Wang S., Li X., Chen X., Zhao Y., Marimont SN., Tarroni G., Saase V., Maier-Hein L., Maier-Hein K.:
    MOOD 2020: A Public Benchmark for Out-of-Distribution Detection and Localization on Medical Images
    In: IEEE Transactions on Medical Imaging 41 (2022), p. 2728-2738
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2022.3170077

2021

  • Budd S., Day TG., Simpson JM., Lloyd K., Matthew J., Skelton E., Razavi R., Kainz B.:
    Can Non-specialists Provide High Quality Gold Standard Labels in Challenging Modalities?
    Springer Science and Business Media Deutschland GmbH, 2021
    ISBN: 9783030877217
    DOI: 10.1007/978-3-030-87722-4_23
  • Budd S., Robinson EC., Kainz B.:
    A survey on active learning and human-in-the-loop deep learning for medical image analysis
    In: Medical Image Analysis 71 (2021), Article No.: 102062
    ISSN: 1361-8415
    DOI: 10.1016/j.media.2021.102062
  • Budd S., Sinclair M., Day TG., Vlontzos A., Tan J., Liu T., Matthew J., Skelton E., Simpson JM., Razavi R., Glocker B., Rueckert D., Robinson EC., Kainz B.:
    Detecting Hypo-plastic Left Heart Syndrome in Fetal Ultrasound via Disease-Specific Atlas Maps
    Springer Science and Business Media Deutschland GmbH, 2021
    ISBN: 9783030872335
    DOI: 10.1007/978-3-030-87234-2_20
  • Day TG., Kainz B., Hajnal J., Razavi R., Simpson JM.:
    Artificial intelligence, fetal echocardiography, and congenital heart disease
    In: Prenatal Diagnosis 41 (2021), p. 733-742
    ISSN: 0197-3851
    DOI: 10.1002/pd.5892
  • Dou Q., So TY., Jiang M., Liu Q., Vardhanabhuti V., Kaissis G., Li Z., Si W., Lee HHC., Yu K., Feng Z., Dong L., Burian E., Jungmann F., Braren R., Makowski M., Kainz B., Rueckert D., Glocker B., Yu SCH., Heng PA.:
    Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
    In: npj Digital Medicine 4 (2021), Article No.: 60
    ISSN: 2398-6352
    DOI: 10.1038/s41746-021-00431-6
  • Hou B., Kaissis G., Summers R., Kainz B.:
    RATCHET: Medical Transformer for Chest X-ray Diagnosis and Reporting
    Springer Science and Business Media Deutschland GmbH, 2021
    ISBN: 9783030872335
    DOI: 10.1007/978-3-030-87234-2_28
  • Jiang G., Kainz B.:
    Deep radiance caching: Convolutional autoencoders deeper in ray tracing
    In: Computers & Graphics 94 (2021), p. 22-31
    ISSN: 0097-8493
    DOI: 10.1016/j.cag.2020.09.007
  • Li L., Sinclair M., Makropoulos A., Hajnal J.V., David Edwards A., Kainz B., Rueckert D., Alansary A.:
    CAS-Net: Conditional Atlas Generation and Brain Segmentation for Fetal MRI
    3rd International Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2021, and the 6th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2021, held in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2021
    DOI: 10.1007/978-3-030-87735-4_21
  • Chartsias A., Gao S., Mumith A., Oliveira J., Bhatia K., Kainz B., Beqiri A.:
    Contrastive Learning for View Classification of Echocardiograms
    Springer Science and Business Media Deutschland GmbH, 2021
    ISBN: 9783030875824
    DOI: 10.1007/978-3-030-87583-1_15
  • Ma Q., Robinson E.C., Kainz B., Rueckert D., Alansary A.:
    PialNN: A Fast Deep Learning Framework for Cortical Pial Surface Reconstruction
    Springer Science and Business Media Deutschland GmbH, 2021
    ISBN: 9783030875855
    DOI: 10.1007/978-3-030-87586-2_8
  • Kainz B., Heinrich MP., Makropoulos A., Oppenheimer J., Mandegaran R., Sankar S., Deane C., Mischkewitz S., Al-Noor F., Rawdin AC., Ruttloff A., Klein-Weigel PF., Stevenson MD., Curry N.:
    Non-invasive diagnosis of deep vein thrombosis from ultrasound imaging with machine learning
    In: npj Digital Medicine 4 (2021), p. 1-20
    ISSN: 2398-6352
    DOI: 10.1038/s41746-021-00503-7
    URL: https://www.nature.com/articles/s41746-021-00503-7.pdf
  • Meng Q., Matthew J., Zimmer VA., Gomez A., Lloyd DFA., Rueckert D., Kainz B.:
    Mutual Information-Based Disentangled Neural Networks for Classifying Unseen Categories in Different Domains: Application to Fetal Ultrasound Imaging
    In: IEEE Transactions on Medical Imaging 40 (2021), p. 722-734
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2020.3035424
  • Reynaud H., Vlontzos A., Hou B., Beqiri A., Leeson P., Kainz B.:
    Ultrasound Video Transformers for Cardiac Ejection Fraction Estimation
    Springer Science and Business Media Deutschland GmbH, 2021
    ISBN: 9783030872304
    DOI: 10.1007/978-3-030-87231-1_48
  • Schmidtke L., Vlontzos A., Ellershaw S., Lukens A., Arichi T., Kainz B.:
    Unsupervised Human Pose Estimation through Transforming Shape Templates
    2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2021 (Virtual, Online, USA, 19. June 2021 - 25. June 2021)
    In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition 2021
    DOI: 10.1109/CVPR46437.2021.00251
  • Skelton E., Matthew J., Li Y., Khanal B., Martinez JJC., Toussaint N., Gupta C., Knight C., Kainz B., Hajnal JV., Rutherford M.:
    Towards automated extraction of 2D standard fetal head planes from 3D ultrasound acquisitions: A clinical evaluation and quality assessment comparison
    In: Radiography 27 (2021), p. 519-526
    ISSN: 1078-8174
    DOI: 10.1016/j.radi.2020.11.006
  • Tan J., Hou B., Day TG., Simpson JM., Rueckert D., Kainz B.:
    Detecting Outliers with Poisson Image Interpolation
    Springer Science and Business Media Deutschland GmbH, 2021
    ISBN: 9783030872397
    DOI: 10.1007/978-3-030-87240-3_56

2020

  • Budd S., Patkee P., Baburamani A., Rutherford M., Robinson EC., Kainz B.:
    Surface Agnostic Metrics for Cortical Volume Segmentation and Regression
    3rd International Workshop on Machine Learning in Clinical Neuroimaging, MLCN 2020, and 2nd International Workshop on Radiogenomics in Neuro-oncology, RNO-AI 2020, held in conjunction with MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Seyed Mostafa Kia, Hassan Mohy-ud-Din, Ahmed Abdulkadir, Cher Bass, Mohamad Habes, Jane Maryam Rondina, Chantal Tax, Hongzhi Wang, Thomas Wolfers, Saima Rathore, Madhura Ingalhalikar (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
    DOI: 10.1007/978-3-030-66843-3_1
  • Grzech D., Kainz B., Glocker B., le Folgoc L.:
    Image Registration via Stochastic Gradient Markov Chain Monte Carlo
    2nd International Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2020, and the 3rd International Workshop on Graphs in Biomedical Image Analysis, GRAIL 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 8. October 2020 - 8. October 2020)
    In: Carole H. Sudre, Hamid Fehri, Tal Arbel, Christian F. Baumgartner, Adrian Dalca, Ryutaro Tanno, Koen Van Leemput, William M. Wells, Aristeidis Sotiras, Bartlomiej Papiez, Enzo Ferrante, Sarah Parisot (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
    DOI: 10.1007/978-3-030-60365-6_1
  • Hinterreiter A., Streit M., Kainz B.:
    Projective Latent Interventions for Understanding and Fine-Tuning Classifiers
    3rd International Workshop on Interpretability of Machine Intelligence in Medical Image Computing, iMIMIC 2020, the 2nd International Workshop on Medical Image Learning with Less Labels and Imperfect Data, MIL3ID 2020, and the 5th International Workshop on Large-scale Annotation of Biomedical data and Expert Label Synthesis, LABELS 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Jaime Cardoso, Wilson Silva, Ricardo Cruz, Hien Van Nguyen, Badri Roysam, Nicholas Heller, Pedro Henriques Abreu, Jose Pereira Amorim, Ivana Isgum, Vishal Patel, Kevin Zhou, Steve Jiang, Ngan Le, Khoa Luu, Raphael Sznitman, Veronika Cheplygina, Samaneh Abbasi, Diana Mateus, Emanuele Trucco (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
    DOI: 10.1007/978-3-030-61166-8_2
  • Liu T., Meng Q., Vlontzos A., Tan J., Rueckert D., Kainz B.:
    Ultrasound Video Summarization Using Deep Reinforcement Learning
    23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Anne L. Martel, Purang Abolmaesumi, Danail Stoyanov, Diana Mateus, Maria A. Zuluaga, S. Kevin Zhou, Daniel Racoceanu, Leo Joskowicz (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
    DOI: 10.1007/978-3-030-59716-0_46
  • Meng Q., Rueckert D., Kainz B.:
    Unsupervised Cross-domain Image Classification by Distance Metric Guided Feature Alignment
    1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Yipeng Hu, Roxane Licandro, J. Alison Noble, Jana Hutter, Andrew Melbourne, Stephen Aylward, Esra Abaci Turk, Jordina Torrents Barrena, Jordina Torrents Barrena (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
    DOI: 10.1007/978-3-030-60334-2_15
  • Miolane N., Guigui N., Le Brigant A., Mathe J., Hou B., Thanwerdas Y., Heyder S., Peltre O., Koep N., Zaatiti H., Hajri H., Cabanes Y., Gerald T., Chauchat P., Shewmake C., Brooks D., Kainz B., Donnat C., Holmes S., Pennec X.:
    Geomstats: A python package for riemannian geometry in machine learning
    In: Journal of Machine Learning Research 21 (2020)
    ISSN: 1532-4435
  • Tan J., Au A., Meng Q., FinesilverSmith S., Simpson J., Rueckert D., Razavi R., Day T., Lloyd D., Kainz B.:
    Automated Detection of Congenital Heart Disease in Fetal Ultrasound Screening
    1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 (Lima, PER, 4. October 2020 - 8. October 2020)
    In: Yipeng Hu, Roxane Licandro, J. Alison Noble, Jana Hutter, Andrew Melbourne, Stephen Aylward, Esra Abaci Turk, Jordina Torrents Barrena, Jordina Torrents Barrena (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
    DOI: 10.1007/978-3-030-60334-2_24
  • Tan J., Kainz B.:
    Divergent search for image classification behaviors
    2020 Genetic and Evolutionary Computation Conference, GECCO 2020 (Cancun, MEX, 8. July 2020 - 12. July 2020)
    In: GECCO 2020 Companion - Proceedings of the 2020 Genetic and Evolutionary Computation Conference Companion 2020
    DOI: 10.1145/3377929.3389973
  • Vlontzos A., Budd S., Hou B., Rueckert D., Kainz B.:
    3D Probabilistic Segmentation and Volumetry from 2D Projection Images
    2nd International Workshop on Thoracic Image Analysis, TIA 2020 Held in Conjunction with Medical Image Computing and Computer-Assisted Intervention Conference, MICCAI 2020 (Lima, PER, 8. October 2020 - 8. October 2020)
    In: Jens Petersen, Raúl San José Estépar, Alexander Schmidt-Richberg, Sarah Gerard, Bianca Lassen-Schmidt, Colin Jacobs, Reinhard Beichel, Kensaku Mori (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020
    DOI: 10.1007/978-3-030-62469-9_5

2019

  • Alansary A., Oktay O., Li Y., Le Folgoc L., Hou B., Vaillant G., Kamnitsas K., Vlontzos A., Glocker B., Kainz B., Rueckert D.:
    Evaluating reinforcement learning agents for anatomical landmark detection
    In: Medical Image Analysis 53 (2019), p. 156-164
    ISSN: 1361-8415
    DOI: 10.1016/j.media.2019.02.007
  • Budd S., Sinclair M., Khanal B., Matthew J., Lloyd D., Gomez A., Toussaint N., Robinson EC., Kainz B.:
    Confident head circumference measurement from ultrasound with real-time feedback for sonographers
    22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13. October 2019 - 17. October 2019)
    In: Dinggang Shen, Pew-Thian Yap, Tianming Liu, Terry M. Peters, Ali Khan, Lawrence H. Staib, Caroline Essert, Sean Zhou (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
    DOI: 10.1007/978-3-030-32251-9_75
  • Castro DC., Tan J., Kainz B., Konukoglu E., Glocker B.:
    Morpho-Mnist: Quantitative assessment and diagnostics for representation learning
    In: Journal of Machine Learning Research 20 (2019)
    ISSN: 1532-4435
  • Chotzoglou E., Kainz B.:
    Exploring the relationship between segmentation uncertainty, segmentation performance and inter-observer variability with probabilistic networks
    4th International Workshop on Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, LABELS 2019, the 1st International Workshop on Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention, HAL-MICCAI 2019, and the 2nd International Workshop on Correction of Brainshift with Intra-Operative Ultrasound, CuRIOUS 2019, held in conjunction with the 22nd International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 17. October 2019 - 17. October 2019)
    In: Luping Zhou, Nicholas Heller, Yiyu Shi, Danny Chen, X. Sharon Hu, Yiming Xiao, Raphael Sznitman, Veronika Cheplygina, Diana Mateus, Emanuele Trucco, Matthieu Chabanas, Hassan Rivaz, Ingerid Reinertsen (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
    DOI: 10.1007/978-3-030-33642-4_6
  • Holland R., Patel U., Lung P., Chotzoglou E., Kainz B.:
    Automatic detection of bowel disease with residual networks
    2nd International Workshop on Predictive Intelligence in Medicine, PRIME 2019, held in conjunction with the 22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13. October 2019 - 13. October 2019)
    In: Islem Rekik, Ehsan Adeli, Sang Hyun Park (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
    DOI: 10.1007/978-3-030-32281-6_16
  • Hou B., Vlontzos A., Alansary A., Rueckert D., Kainz B.:
    Flexible Conditional Image Generation of Missing Data with Learned Mental Maps
    2nd International Workshop on Machine Learning for Medical Image Reconstruction, MLMIR 2019 held in Conjunction with 22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 17. October 2019 - 17. October 2019)
    In: Florian Knoll, Andreas Maier, Daniel Rueckert, Jong Chul Ye (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
    DOI: 10.1007/978-3-030-33843-5_13
  • Lloyd DF., Pushparajah K., Simpson JM., van Amerom JF., van Poppel MP., Schulz A., Kainz B., Deprez M., Lohezic M., Allsop J., Mathur S., Bellsham-Revell H., Vigneswaran T., Charakida M., Miller O., Zidere V., Sharland G., Rutherford M., Hajnal JV., Razavi R.:
    Three-dimensional visualisation of the fetal heart using prenatal MRI with motion-corrected slice-volume registration: a prospective, single-centre cohort study
    In: Lancet 393 (2019), p. 1619-1627
    ISSN: 0140-6736
    DOI: 10.1016/S0140-6736(18)32490-5
  • Meng Q., Pawlowski N., Rueckert D., Kainz B.:
    Representation disentanglement for multi-task learning with application to fetal ultrasound
    1st International Workshop on Smart Ultrasound Imaging, SUSI 2019, and the 4th International Workshop on Preterm, Perinatal and Paediatric Image Analysis, PIPPI 2019, held in conjunction with the 22nd International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 17. October 2019 - 17. October 2019)
    In: Qian Wang, Alberto Gomez, Jana Hutter, Alberto Gomez, Veronika Zimmer, Jana Hutter, Emma Robinson, Daan Christiaens, Andrew Melbourne, Kristin McLeod, Oliver Zettinig, Roxane Licandro, Esra Abaci Turk (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
    DOI: 10.1007/978-3-030-32875-7_6
  • Meng Q., Sinclair M., Zimmer V., Hou B., Rajchl M., Toussaint N., Oktay O., Schlemper J., Gomez A., Housden J., Matthew J., Rueckert D., Schnabel JA., Kainz B.:
    Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging
    In: IEEE Transactions on Medical Imaging 38 (2019), p. 2755-2767
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2019.2913311
  • Robinson R., Valindria VV., Bai W., Oktay O., Kainz B., Suzuki H., Sanghvi MM., Aung N., Paiva JM., Zemrak F., Fung K., Lukaschuk E., Lee AM., Carapella V., Kim YJ., Piechnik SK., Neubauer S., Petersen SE., Page C., Matthews PM., Rueckert D., Glocker B.:
    Automated quality control in image segmentation: Application to the UK Biobank cardiovascular magnetic resonance imaging study
    In: Journal of Cardiovascular Magnetic Resonance 21 (2019), Article No.: 18
    ISSN: 1097-6647
    DOI: 10.1186/s12968-019-0523-x
  • Schlemper J., Oktay O., Schaap M., Heinrich M., Kainz B., Glocker B., Rueckert D.:
    Attention gated networks: Learning to leverage salient regions in medical images
    In: Medical Image Analysis 53 (2019), p. 197-207
    ISSN: 1361-8415
    DOI: 10.1016/j.media.2019.01.012
  • Schultz T., Puig A., Kainz B.:
    Foreword to the special section on the Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM) at Medical Image Computing and Computer Assisted Intervention (MICCAI) 2018
    In: Computers & Graphics 83 (2019), p. A5-A6
    ISSN: 0097-8493
    DOI: 10.1016/j.cag.2019.08.001
  • Tan J., Au A., Meng Q., Kainz B.:
    Semi-supervised learning of fetal anatomy from ultrasound
    1st MICCAI Workshop on Domain Adaptation and Representation Transfer, DART 2019, and the 1st International Workshop on Medical Image Learning with Less Labels and Imperfect Data, MIL3ID 2019, held in conjunction with 22nd International Conference on Medical Image Computing and Computer- Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13. October 2019 - 17. October 2019)
    In: Qian Wang, Fausto Milletari, Nicola Rieke, Hien V. Nguyen, Badri Roysam, Shadi Albarqouni, M. Jorge Cardoso, Ziyue Xu, Konstantinos Kamnitsas, Vishal Patel, Steve Jiang, Kevin Zhou, Khoa Luu, Ngan Le (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
    DOI: 10.1007/978-3-030-33391-1_18
  • Vlontzos A., Alansary A., Kamnitsas K., Rueckert D., Kainz B.:
    Multiple landmark detection using multi-agent reinforcement learning
    22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13. October 2019 - 17. October 2019)
    In: Dinggang Shen, Pew-Thian Yap, Tianming Liu, Terry M. Peters, Ali Khan, Lawrence H. Staib, Caroline Essert, Sean Zhou (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
    DOI: 10.1007/978-3-030-32251-9_29
  • Wright R., Toussaint N., Gomez A., Zimmer V., Khanal B., Matthew J., Skelton E., Kainz B., Rueckert D., Hajnal JV., Schnabel JA.:
    Complete Fetal Head Compounding from Multi-view 3D Ultrasound
    22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019 (Shenzhen, CHN, 13. October 2019 - 17. October 2019)
    In: Dinggang Shen, Pew-Thian Yap, Tianming Liu, Terry M. Peters, Ali Khan, Lawrence H. Staib, Caroline Essert, Sean Zhou (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2019
    DOI: 10.1007/978-3-030-32248-9_43

2018

  • Alansary A., Le Folgoc L., Vaillant G., Oktay O., Li Y., Bai W., Passerat-Palmbach J., Guerrero R., Kamnitsas K., Hou B., Mcdonagh S., Glocker B., Kainz B., Rueckert D.:
    Automatic view planning with multi-scale deep reinforcement learning agents
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00928-1_32
  • Bai W., Sinclair M., Tarroni G., Oktay O., Rajchl M., Vaillant G., Lee AM., Aung N., Lukaschuk E., Sanghvi MM., Zemrak F., Fung K., Paiva JM., Carapella V., Kim YJ., Suzuki H., Kainz B., Matthews PM., Petersen SE., Piechnik SK., Neubauer S., Glocker B., Rueckert D.:
    Automated cardiovascular magnetic resonance image analysis with fully convolutional networks 08 Information and Computing Sciences 0801 Artificial Intelligence and Image Processing
    In: Journal of Cardiovascular Magnetic Resonance 20 (2018), Article No.: 65
    ISSN: 1097-6647
    DOI: 10.1186/s12968-018-0471-x
  • Cerrolaza JJ., Li Y., Biffi C., Gomez A., Sinclair M., Matthew J., Knight C., Kainz B., Rueckert D.:
    3D fetal skull reconstruction from 2DUS via deep conditional generative networks
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00928-1_44
  • Hou B., Khanal B., Alansary A., Mcdonagh S., Davidson A., Rutherford M., Hajnal J., Rueckert D., Glocker B., Kainz B.:
    3-D Reconstruction in Canonical Co-Ordinate Space from Arbitrarily Oriented 2-D Images
    In: IEEE Transactions on Medical Imaging 37 (2018), p. 1737-1750
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2018.2798801
  • Hou B., Miolane N., Khanal B., Lee MCH., Alansary A., Mcdonagh S., Hajnal JV., Rueckert D., Glocker B., Kainz B.:
    Computing CNN loss and gradients for pose estimation with Riemannian geometry
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00928-1_85
  • Kainz B., Bhatia K., Vercauteren T., Oktay O.:
    RAMBO 2018 Preface
    In: David Snead, Emanuele Trucco, Danail Stoyanov, Zeike Taylor, Lena Maier-Hein, Nasir Rajpoot, Hrvoje Bogunovic, Francesco Ciompi, Mitko Veta, Mona K. Garvin, Xin Jan Chen, Anne Martel, Jeroen van der Laak, Yanwu Xu, Stephen McKenna (ed.): Image Analysis for Moving Organ, Breast, and Thoracic Images - Third International Workshop, RAMBO 2018, Fourth International Workshop, BIA 2018, and First International Workshop, TIA 2018, Held in Conjunction with MICCAI 2018, Proceedings, Springer Verlag, 2018, p. VII- (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol.11040 LNCS)
  • Lloyd DFA, van Poppel M, Schultz A, Pushparajah K, Simpson J, van Amerom JFP, Kainz B, Kuklisova-Murgasova M, Vigneswaran T, Charakida M, Miller O, Zidere V, Sharland G, Rutherford M, Hajnal J, Razavi R:
    MOTION CORRECTED FETAL CARDIAC MRI INCREASES DIAGNOSTIC CONFIDENCE IN CLINICALLY CHALLENGING CASES
    In: Heart 104 (2018), p. A11-A11
    ISSN: 1355-6037
    DOI: 10.1136/heartjnl-2017-BCCA.31
  • Kamnitsas K., Bai W., Ferrante E., Mcdonagh S., Sinclair M., Pawlowski N., Rajchl M., Lee M., Kainz B., Rueckert D., Glocker B.:
    Ensembles of multiple models and architectures for robust brain tumour segmentation
    3rd International Workshop on Brainlesion, BrainLes 2017 Held in Conjunction with Medical Image Computing for Computer Assisted Intervention , MICCAI 2017 (Quebec City, QC, CAN, 14. September 2017 - 14. September 2017)
    In: Bjoern Menze, Alessandro Crimi, Hugo Kuijf, Mauricio Reyes, Spyridon Bakas (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-319-75238-9_38
  • Khanal B., Gomez A., Toussaint N., Mcdonagh S., Zimmer V., Skelton E., Matthew J., Grzech D., Wright R., Gupta C., Hou B., Rueckert D., Schnabel JA., Kainz B.:
    EchoFusion: Tracking and reconstruction of objects in 4D freehand ultrasound imaging without external trackers
    1st International Workshop on Data Driven Treatment Response Assessment, DATRA 2018 and 3rd International Workshop on Preterm, Perinatal, and Paediatric Image Analysis, PIPPI 2018 Held in Conjunction with 21st International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 16. September 2018)
    In: Andrew Melbourne, Rosalind Aughwane, Emma Robinson, Roxane Licandro, Melanie Gau, Martin Kampel, Matthew DiFranco, Paolo Rota, Roxane Licandro, Pim Moeskops, Ernst Schwartz, Antonios Makropoulos (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00807-9_12
  • Li Y., Alansary A., Cerrolaza JJ., Khanal B., Sinclair M., Matthew J., Gupta C., Knight C., Kainz B., Rueckert D.:
    Fast multiple landmark localisation using a patch-based iterative network
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00928-1_64
  • Li Y., Khanal B., Hou B., Alansary A., Cerrolaza JJ., Sinclair M., Matthew J., Gupta C., Knight C., Kainz B., Rueckert D.:
    Standard plane detection in 3D fetal ultrasound using an iterative transformation network
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger, Alejandro F. Frangi (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00928-1_45
  • Meng Q., Baumgartner C., Sinclair M., Housden J., Rajchl M., Gomez A., Hou B., Toussaint N., Zimmer V., Tan J., Matthew J., Rueckert D., Schnabel J., Kainz B.:
    Automatic shadow detection in 2D ultrasound images
    1st International Workshop on Data Driven Treatment Response Assessment, DATRA 2018 and 3rd International Workshop on Preterm, Perinatal, and Paediatric Image Analysis, PIPPI 2018 Held in Conjunction with 21st International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 16. September 2018)
    In: Andrew Melbourne, Rosalind Aughwane, Emma Robinson, Roxane Licandro, Melanie Gau, Martin Kampel, Matthew DiFranco, Paolo Rota, Roxane Licandro, Pim Moeskops, Ernst Schwartz, Antonios Makropoulos (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00807-9_7
  • Oktay O., Ferrante E., Kamnitsas K., Heinrich M., Bai W., Caballero J., Cook SA., De Marvao A., Dawes T., O'Regan DP., Kainz B., Glocker B., Rueckert D.:
    Anatomically Constrained Neural Networks (ACNNs): Application to Cardiac Image Enhancement and Segmentation
    In: IEEE Transactions on Medical Imaging 37 (2018), p. 384-395
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2017.2743464
  • Robinson R., Oktay O., Bai W., Valindria VV., Sanghvi MM., Aung N., Paiva JM., Zemrak F., Fung K., Lukaschuk E., Lee AM., Carapella V., Kim YJ., Kainz B., Piechnik SK., Neubauer S., Petersen SE., Page C., Rueckert D., Glocker B.:
    Real-Time Prediction of Segmentation Quality
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Alejandro F. Frangi, Gabor Fichtinger, Julia A. Schnabel, Carlos Alberola-López, Christos Davatzikos (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00937-3_66
  • Sinclair M., Baumgartner CF., Matthew J., Bai W., Martinez JC., Li Y., Smith S., Knight CL., Kainz B., Hajnal J., King AP., Rueckert D.:
    Human-level Performance on Automatic Head Biometrics in Fetal Ultrasound Using Fully Convolutional Neural Networks
    40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018 (Honolulu, HI, USA, 18. July 2018 - 21. July 2018)
    In: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2018
    DOI: 10.1109/EMBC.2018.8512278
  • Tanno R., Makropoulos A., Arslan S., Oktay O., Mischkewitz S., Al-Noor F., Oppenheimer J., Mandegaran R., Kainz B., Heinrich MP.:
    AutoDVT: Joint real-time classification for vein compressibility analysis in deep vein thrombosis ultrasound diagnostics
    21st International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 (Granada, ESP, 16. September 2018 - 20. September 2018)
    In: Gabor Fichtinger, Christos Davatzikos, Carlos Alberola-López, Alejandro F. Frangi, Julia A. Schnabel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018
    DOI: 10.1007/978-3-030-00934-2_100
  • Verbruggen SW., Kainz B., Shelmerdine SC., Arthurs OJ., Hajnal JV., Rutherford MA., Phillips ATM., Nowlan NC.:
    Altered biomechanical stimulation of the developing hip joint in presence of hip dysplasia risk factors
    In: Journal of Biomechanics 78 (2018), p. 1-9
    ISSN: 0021-9290
    DOI: 10.1016/j.jbiomech.2018.07.016
  • Verbruggen SW., Kainz B., Shelmerdine SC., Hajnal JV., Rutherford MA., Arthurs OJ., Phillips ATM., Nowlan NC.:
    Stresses and strains on the human fetal skeleton during development
    In: Journal of the Royal Society Interface 15 (2018), Article No.: 20170593
    ISSN: 1742-5689
    DOI: 10.1098/rsif.2017.0593

2017

  • Alansary A., Rajchl M., Mcdonagh SG., Murgasova M., Damodaram M., Lloyd DFA., Davidson A., Rutherford M., Hajnal JV., Rueckert D., Kainz B.:
    PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI
    In: IEEE Transactions on Medical Imaging 36 (2017), p. 2031-2044
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2017.2737081
  • Baumgartner CF., Kamnitsas K., Matthew J., Fletcher TP., Smith S., Koch LM., Kainz B., Rueckert D.:
    SonoNet: Real-Time Detection and Localisation of Fetal Standard Scan Planes in Freehand Ultrasound
    In: IEEE Transactions on Medical Imaging 36 (2017), p. 2204-2215
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2017.2712367
  • Cerrolaza JJ., Oktay O., Gomez A., Matthew J., Knight C., Kainz B., Rueckert D.:
    Fetal skull segmentation in 3D ultrasound via structured geodesic random forest
    International Workshop on Fetal and Infant Image Analysis, FIFI 2017 and 4th International Workshop on Ophthalmic Medical Image Analysis, OMIA 2017 held in Conjunction with 20th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2017 (Quebec City, QC, CAN, 14. September 2017 - 14. September 2017)
    In: M. Jorge Cardoso, Tal Arbel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2017
    DOI: 10.1007/978-3-319-67561-9_3
  • Hou B., Alansary A., McDonagh S., Davidson A., Rutherford M., Hajnal JV., Rueckert D., Glocker B., Kainz B.:
    Predicting slice-to-volume transformation in presence of arbitrary subject motion
    20th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2017 (Quebec City, QC, CAN, 11. September 2017 - 13. September 2017)
    In: Pierre Jannin, Simon Duchesne, Maxime Descoteaux, Alfred Franz, D. Louis Collins, Lena Maier-Hein (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2017
    DOI: 10.1007/978-3-319-66185-8_34
  • Kainz B., Bhatia K., Vercauteren T.:
    Preface RAMBO 2017
    Springer Verlag, 2017
    ISBN: 9783319675633
    URL: https://www.scopus.com/record/display.uri?eid=2-s2.0-85029585297&origin=inward
  • Mcdonagh S., Hou B., Alansary A., Oktay O., Kamnitsas K., Rutherford M., Hajnal JV., Kainz B.:
    Context-sensitive super-resolution for fast fetal magnetic resonance imaging
    5th International Workshop on Computational Methods for Molecular Imaging, CMMI 2017, 2nd International Workshop on Reconstruction and Analysis of Moving Body Organs, RAMBO 2017 and 1st International Stroke Workshop on Imaging and Treatment Challenges, SWITCH 2017 held in Conjunction with 20th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2017 (Quebec City, QC, CAN, 14. September 2017 - 14. September 2017)
    In: M. Jorge Cardoso, Tal Arbel (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2017
    DOI: 10.1007/978-3-319-67564-0_12
  • Miao H., Mistelbauer G., Karimov A., Alansary A., Davidson A., Lloyd DFA., Damodaram M., Story L., Hutter J., Hajnal JV., Rutherford M., Preim B., Kainz B., Groeller ME.:
    Placenta maps: In utero placental health assessment of the human fetus
    In: IEEE Transactions on Visualization and Computer Graphics 23 (2017), p. 1612-1623
    ISSN: 1077-2626
    DOI: 10.1109/TVCG.2017.2674938
  • Rajchl M., Lee MCH., Oktay O., Kamnitsas K., Passerat-Palmbach J., Bai W., Damodaram M., Rutherford MA., Hajnal JV., Kainz B., Rueckert D.:
    DeepCut: Object Segmentation from Bounding Box Annotations Using Convolutional Neural Networks
    In: IEEE Transactions on Medical Imaging 36 (2017), p. 674-683
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2016.2621185
  • Toisoul A., Rueckert D., Kainz B.:
    Accessible GLSL shader programming
    38th Annual Conference on European Association for Computer Graphics, EUROGRAPHICS 2017 (Lyon, FRA, 24. April 2017 - 28. April 2017)
    In: European Association for Computer Graphics - 38th Annual Conference, EUROGRAPHICS 2017 - Education Papers 2017
    DOI: 10.2312/eged.20171024

2016

  • Alansary A., Kamnitsas K., Davidson A., Khlebnikov R., Rajchl M., Malamateniou C., Rutherford M., Hajnal JV., Glocker B., Rueckert D., Kainz B.:
    Fast fully automatic segmentation of the human placenta from motion corrupted MRI
    In: Gozde Unal, Sebastian Ourselin, Leo Joskowicz, Mert R. Sabuncu, William Wells (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2016
    DOI: 10.1007/978-3-319-46723-8_68
  • Baumgartner CF., Kamnitsas K., Matthew J., Smith S., Kainz B., Rueckert D.:
    Real-time standard scan plane detection and localisation in fetal ultrasound using fully convolutional neural networks
    In: Gozde Unal, Sebastian Ourselin, Leo Joskowicz, Mert R. Sabuncu, William Wells (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2016
    DOI: 10.1007/978-3-319-46723-8_24
  • Rueckert D., Glocker B., Kainz B.:
    Learning clinically useful information from images: Past, present and future
    In: Medical Image Analysis 33 (2016), p. 1339-1351
    ISSN: 1361-8415
    DOI: 10.1016/j.media.2016.06.009

2015

  • Alansary A., Lee M., Keraudren K., Kainz B., Malamateniou C., Rutherford M., Hajnal JV., Glocker B., Rueckert D.:
    Automatic brain localization in fetal MRI using superpixel graphs
    1st International Workshop on Machine Learning Meets Medical Imaging, MLMMI 2015 (Lille, FRA, 11. July 2015 - 11. July 2015)
    In: Kanwal K. Bhatia, Herve Lombaert (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2015
    DOI: 10.1007/978-3-319-27929-9_2
  • Bowles C., Nowlan NC., Hayat TTA., Malamateniou C., Rutherford M., Hajnal JV., Rueckert D., Kainz B.:
    Machine learning for the automatic localisation of foetal body parts in cine-MRI scans
    Medical Imaging 2015: Image Processing (Orlando, FL, USA, 24. February 2015 - 26. February 2015)
    In: Martin A. Styner, Sebastien Ourselin (ed.): Progress in Biomedical Optics and Imaging - Proceedings of SPIE 2015
    DOI: 10.1117/12.2081669
  • Egger J., Busse H., Brandmaier P., Seider D., Gawlitza M., Strocka S., Voglreiter P., Dokter M., Hofmann M., Kainz B., Chen X., Hann A., Boechat P., Yu W., Freisleben B., Alhonnoro T., Pollari M., Moche M., Schmalstieg D.:
    RFA-cut: Semi-automatic segmentation of radiofrequency ablation zones with and without needles via optimal s-t-cuts
    37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2015 (Milan, ITA, 25. August 2015 - 29. August 2015)
    In: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2015
    DOI: 10.1109/EMBC.2015.7318883
  • Egger J., Busse H., Brandmaier P., Seider D., Gawlitza M., Strocka S., Voglreiter P., Dokter M., Hofmann M., Kainz B., Hann A., Chen X., Alhonnoro T., Pollari M., Schmalstieg D., Moche M.:
    Interactive Volumetry of Liver Ablation Zones
    In: Scientific Reports 5 (2015), Article No.: 15373
    ISSN: 2045-2322
    DOI: 10.1038/srep15373
  • Kainz B., Alansary A., Malamateniou C., Keraudren K., Rutherford M., Hajnal JV., Rueckert D.:
    Flexible reconstruction and correction of unpredictable motion from stacks of 2D images
    18th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2015 (Munich, DEU, 5. October 2015 - 9. October 2015)
    In: Joachim Hornegger, Alejandro F. Frangi, William M. Wells, Alejandro F. Frangi, Nassir Navab, Joachim Hornegger, Nassir Navab, William M. Wells, William M. Wells, Alejandro F. Frangi, Joachim Hornegger, Nassir Navab (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2015
    DOI: 10.1007/978-3-319-24571-3_66
  • Kainz B., Malamateniou C., Ferrazzi G., Murgasova M., Egger J., Keraudren K., Rutherford M., Hajnal JV., Rueckert D.:
    Adaptive scan strategies for fetal MRI imaging using slice to volume techniques
    12th IEEE International Symposium on Biomedical Imaging, ISBI 2015 (Brooklyn, NY, USA, 16. April 2015 - 19. April 2015)
    In: Proceedings - International Symposium on Biomedical Imaging 2015
    DOI: 10.1109/ISBI.2015.7164004
  • Kainz B., Steinberger M., Wein W., Kuklisova-Murgasova M., Malamateniou C., Keraudren K., Torsney-Weir T., Rutherford M., Aljabar P., Hajnal JV., Rueckert D.:
    Fast Volume Reconstruction from Motion Corrupted Stacks of 2D Slices
    In: IEEE Transactions on Medical Imaging 34 (2015), p. 1901-1913
    ISSN: 0278-0062
    DOI: 10.1109/TMI.2015.2415453
  • Keraudren K., Kainz B., Oktay O., Kyriakopoulou V., Rutherford M., Hajnal JV., Rueckert D.:
    Automated localization of fetal organs in MRI using random forests with steerable features
    18th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2015 (Munich, DEU, 5. October 2015 - 9. October 2015)
    In: Alejandro F. Frangi, Nassir Navab, Joachim Hornegger, William M. Wells (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2015
    DOI: 10.1007/978-3-319-24574-4_74

2014

  • Kainz B., Keraudren K., Kyriakopoulou V., Rutherford M., Hajnal JV., Rueckert D.:
    Fast fully automatic brain detection in fetal MRI using dense rotation invariant image descriptors
    2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014 (Beijing, CHN, 29. April 2014 - 2. May 2014)
    In: 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014 2014
    DOI: 10.1109/isbi.2014.6868098
  • Kainz B., Malamateniou C., Murgasova M., Keraudren K., Rutherford M., Hajnal JV., Rueckert D.:
    Motion corrected 3D reconstruction of the fetal thorax from prenatal MRI
    17th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2014 (USA, 14. September 2014 - 18. September 2014)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2014
    DOI: 10.1007/978-3-319-10470-6_36
  • Kainz B., Voglreiter P., Sereinigg M., Wiederstein-Grasser I., Mayrhauser U., Köstenbauer S., Pollari M., Khlebnikov R., Seise M., Alhonnoro T., Häme Y., Seider D., Flanagan R., Bost C., Mühl J., O'Neill D., Peng T., Payne S., Rueckert D., Schmalstieg D., Moche M., Kolesnik M., Stiegler P., Portugaller RH.:
    High-resolution contrast enhanced multi-phase hepatic computed tomography data fromaporcine Radio-Frequency Ablation study
    2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014 (Beijing, CHN, 29. April 2014 - 2. May 2014)
    In: 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014 2014
    DOI: 10.1109/isbi.2014.6867814
  • Keraudren K., Kuklisova-Murgasova M., Kyriakopoulou V., Malamateniou C., Rutherford MA., Kainz B., Hajnal JV., Rueckert D.:
    Automated fetal brain segmentation from 2D MRI slices for motion correction
    In: NeuroImage 101 (2014), p. 633-643
    ISSN: 1053-8119
    DOI: 10.1016/j.neuroimage.2014.07.023
  • Khlebnikov R., Voglreiter P., Steinberger M., Kainz B., Schmalstieg D.:
    Parallel irradiance caching for interactive monte-carlo direct volume rendering
    In: Computer Graphics Forum 33 (2014), p. 61-70
    ISSN: 0167-7055
    DOI: 10.1111/cgf.12362
  • Steinberger M., Kenzel M., Kainz B., Mueller J., Wonka P., Schmalstieg D.:
    Parallel generation of architecture on the GPU
    In: Computer Graphics Forum 33 (2014), p. 73-82
    ISSN: 0167-7055
    DOI: 10.1111/cgf.12312
  • Steinberger M., Kenzel M., Kainz B., Wonka P., Schmalstieg D.:
    On-the-fly generation and rendering of infinite cities on the GPU
    In: Computer Graphics Forum 33 (2014), p. 105-114
    ISSN: 0167-7055
    DOI: 10.1111/cgf.12315

2013

  • Kerbl B., Voglreiter P., Khlebnikov R., Schmalstieg D., Seider D., Moche M., Stiegler P., Portugaller RH., Kainz B.:
    Intervention planning of hepatocellular carcinoma radio-frequency ablations
    International Workshop on Clinical Image-Based Procedures: From Planning to Intervention, CLIP 2012 - Held in Conjunction with MICCAI 2012 (FRA, 5. October 2012 - 5. October 2012)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2013
    DOI: 10.1007/978-3-642-38079-2_2
  • Khlebnikov R., Kainz B., Steinberger M., Schmalstieg D.:
    Noise-based volume rendering for the visualization of multivariate volumetric data
    In: IEEE Transactions on Visualization and Computer Graphics 19 (2013), p. 2926-2935
    ISSN: 1077-2626
    DOI: 10.1109/TVCG.2013.180

2012

  • Kainz B., Hauswiesner S., Reitmayr G., Steinberger M., Grasset R., Gruber L., Veas E., Kalkofen D., Seichter H., Schmalstieg D.:
    Omni kinect: Real-time dense volumetric data acquisition and applications
    18th ACM Symposium on Virtual Reality Software and Technology, VRST 2012 (CAN, 10. December 2012 - 12. December 2012)
    In: Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST 2012
  • Kainz B., Portugaller RH., Seider D., Moche M., Stiegler P., Schmalstieg D.:
    Volume visualization in the clinical practice
    6th International Workshop on Augmented Environments for Computer-Assisted Interventions, AE-CAI 2011, Held in Conjunction with the Medical Image Computing and Computer-Assisted Interventions, MICCAI 2011 (CAN, 22. September 2011 - 22. September 2011)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2012
    DOI: 10.1007/978-3-642-32630-1_8
  • Khlebnikov R., Kainz B., Steinberger M., Streit M., Schmalstieg D.:
    Procedural texture synthesis for zoom-independent visualization of multivariate data
    In: Computer Graphics Forum 31 (2012), p. 1355-1364
    ISSN: 0167-7055
    DOI: 10.1111/j.1467-8659.2012.03127.x
  • Steinberger M., Kainz B., Hauswiesner S., Khlebnikov R., Kalkofen D., Schmalstieg D.:
    Ray prioritization using stylization and visual saliency
    In: Computers & Graphics 36 (2012), p. 673-684
    ISSN: 0097-8493
    DOI: 10.1016/j.cag.2012.03.037
  • Steinberger M., Kainz B., Kerbl B., Hauswiesner S., Kenzel M., Schmalstieg D.:
    Softshell: Dynamic scheduling on GPUs
    In: Acm Transactions on Graphics 31 (2012), Article No.: 161
    ISSN: 0730-0301
    DOI: 10.1145/2366145.2366180
  • Steinberger M., Kenzel M., Kainz B., Schmalstieg D.:
    ScatterAlloc: Massively parallel dynamic memory allocation for the GPU
    2012 Innovative Parallel Computing, InPar 2012 (USA, 13. May 2012 - 14. May 2012)
    In: 2012 Innovative Parallel Computing, InPar 2012 2012
    DOI: 10.1109/InPar.2012.6339604
  • Voglreiter P., Steinberger M., Schmalstieg D., Kainz B.:
    Volumetric real-time particle-based representation of large unstructured tetrahedral polygon meshes
    MICCAI 2012 International Workshop on Mesh Processing in Medical Image Analysis, MeshMed 2012 (FRA, 1. October 2012 - 1. October 2012)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2012
    DOI: 10.1007/978-3-642-33463-4_16

2011

  • Kainz B., Steinberger M., Hauswiesner S., Khlebnikov R., Kalkofen D., Schmalstieg D.:
    Using perceptual features to prioritize ray-based image generation
    2011 15th ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games, I3D'11 (USA, 18. February 2011 - 20. February 2011)
    In: Proceedings of the Symposium on Interactive 3D Graphics 2011
    DOI: 10.1145/1944745.1944795
  • Kainz B., Steinberger M., Hauswiesner S., Khlebnikov R., Schmalstieg D.:
    Stylization-based ray prioritization for guaranteed frame rates
    9th International Symposium on Non-Photorealistic Animation and Rendering, NPAR 2011, Co-located with ACM SIGGRAPH 2011 (CAN, 5. August 2011 - 7. August 2011)
    In: NPAR Symposium on Non-Photorealistic Animation and Rendering 2011
    DOI: 10.1145/2024676.2024685
  • Khlebnikov R., Kainz B., Muehl J., Schmalstieg D.:
    Crepuscular rays for tumor accessibility planning
    In: IEEE Transactions on Visualization and Computer Graphics 17 (2011), p. 2163-2172
    ISSN: 1077-2626
    DOI: 10.1109/TVCG.2011.184

2010

  • Alhonnoro T., Pollari M., Lilja M., Flanagan R., Kainz B., Muehl J., Mayrhauser U., Portugaller H., Stiegler P., Tscheliessnigg K.:
    Vessel segmentation for ablation treatment planning and simulation
    13th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2010 (CHN, 20. September 2010 - 24. September 2010)
    In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2010
    DOI: 10.1007/978-3-642-15705-9_6

2009

  • Kainz B., Grabner M., Bornik A., Hauswiesner S., Muehl J., Schmalstieg D.:
    Ray Casting of Multiple Volumetric Datasets with Polyhedral Boundaries on Manycore GPUs
    In: Acm Transactions on Graphics 28 (2009), p. 1-9
    ISSN: 0730-0301
    DOI: 10.1145/1618452.1618498
  • Kainz B., Reiter U., Reiter G., Schmalstieg D.:
    In vivo interactive visualization of four-dimensional blood flow patterns : RRRealtime assessment of volumetric phase contrast MRI
    In: Visual Computer 25 (2009), p. 853-862
    ISSN: 0178-2789
    DOI: 10.1007/s00371-009-0315-7
  • Muehl J., Kainz B., Bornik A., Grabner M., Hauswiesner S., Schmalstieg D.:
    The future of volume graphics in medical virtual reality
    World Congress on Medical Physics and Biomedical Engineering: Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics (DEU, 7. September 2009 - 12. September 2009)
    In: IFMBE Proceedings 2009
    DOI: 10.1007/978-3-642-03882-2_357
  • Muehl JK., Kainz B., Portugaller HR., Stiegler PB., Bauer CH.:
    Computer oriented image acquisition of the liver: Toward a better numerical model for radiofrequency ablation
    31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009 (USA, 2. September 2009 - 6. September 2009)
    In: Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009 2009
    DOI: 10.1109/IEMBS.2009.5334539

2008

  • Kainz B.:
    Automatic differentiation for GPU-accelerated 2D/3D registration
    2008
  • Kainz B., Grabner M., Rüther M.:
    Fast marker based C-Arm pose estimation
    11th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2008 (New York, NY)
    DOI: 10.1007/978-3-540-85990-1_78
  • Reiter G., Reiter U., Kovacs G., Kainz B., Schmidt K., Maier R., Olschewski H., Rienmueller R.:
    Magnetic resonance-derived 3-dimensional blood flow patterns in the main pulmonary artery as a marker of pulmonary hypertension and a measure of elevated mean pulmonary arterial pressure.
    In: Circulation. Cardiovascular genetics 1 (2008), p. 23-30
    ISSN: 1942-3268
    DOI: 10.1161/CIRCIMAGING.108.780247
  • Kainz B.:
    Realtime 3D graphics programming using the Quake3 engine
    Proceeding CGEMS: Computer graphics educational materials source
Friedrich-Alexander-Universität Erlangen-Nürnberg
Chair for Image Data Exploration and Analysis

Konrad-Zuse-Str. 3-5
91058 Erlangen
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